IL_7BOG_022

3D structure

PDB id

7BOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state E (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7BOG|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOG_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.0583

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7BOG|1|A|G|446
7BOG|1|A|G|447
7BOG|1|A|A|448
7BOG|1|A|G|449
7BOG|1|A|G|450
*
7BOG|1|A|C|483
7BOG|1|A|G|484
7BOG|1|A|U|485
7BOG|1|A|U|486
7BOG|1|A|A|487
7BOG|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16