IL_7BOG_047

3D structure

PDB id

7BOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state E (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AGAA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOG_047 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3232

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7BOG|1|A|A|78
7BOG|1|A|G|79
7BOG|1|A|A|80
7BOG|1|A|A|81
*
7BOG|1|A|U|88
7BOG|1|A|U|89
7BOG|1|A|C|90
7BOG|1|A|U|91

Current chains

Chain A

16S rRNA

Nearby chains