IL_7BTB_009

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

7BTB|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_009 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.368

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

7BTB|1|1|U|169
7BTB|1|1|G|170
*
7BTB|1|1|U|248
7BTB|1|1|U|249
7BTB|1|1|U|250
7BTB|1|1|G|251
7BTB|1|1|U|252
7BTB|1|1|A|253

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A