IL_7BTB_042
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GACACCACAAAAG*CUGAAAAUGGAUGGCGC
- Length
- 30 nucleotides
- Bulged bases
- 7BTB|1|1|C|1196, 7BTB|1|1|A|1197, 7BTB|1|1|C|1199, 7BTB|1|1|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BTB|1|1|G|1194
7BTB|1|1|A|1195
7BTB|1|1|C|1196
7BTB|1|1|A|1197
7BTB|1|1|C|1198
7BTB|1|1|C|1199
7BTB|1|1|A|1200
7BTB|1|1|C|1201
7BTB|1|1|A|1202
7BTB|1|1|A|1203
7BTB|1|1|A|1204
7BTB|1|1|A|1205
7BTB|1|1|G|1206
*
7BTB|1|1|C|1298
7BTB|1|1|U|1299
7BTB|1|1|G|1300
7BTB|1|1|A|1301
7BTB|1|1|A|1302
7BTB|1|1|A|1303
7BTB|1|1|A|1304
7BTB|1|1|U|1305
7BTB|1|1|G|1306
7BTB|1|1|G|1307
7BTB|1|1|A|1308
7BTB|1|1|U|1309
7BTB|1|1|G|1310
7BTB|1|1|G|1311
7BTB|1|1|C|1312
7BTB|1|1|G|1313
7BTB|1|1|C|1314
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain W
- Ribosome assembly factor MRT4
- Chain b
- Nucleolar GTP-binding protein 1
- Chain f
- 60S ribosomal protein L33-A
- Chain r
- Ribosome biogenesis protein NSA2
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