IL_7BTB_078

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GAG*UUACC

Length

8 nucleotides

Bulged bases

7BTB|1|1|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_078 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.3127

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7BTB|1|1|G|2412
7BTB|1|1|A|2413
7BTB|1|1|G|2414
*
7BTB|1|1|U|2806
7BTB|1|1|U|2807
7BTB|1|1|A|2808
7BTB|1|1|C|2809
7BTB|1|1|C|2810

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain m

Nucleolar GTP-binding protein 2

Chain r

Ribosome biogenesis protein NSA2