IL_7BTB_079

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7BTB|1|1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_079 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.2185

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7BTB|1|1|U|2423
7BTB|1|1|A|2424
7BTB|1|1|G|2425
*
7BTB|1|1|U|2604
7BTB|1|1|G|2605
7BTB|1|1|G|2606
7BTB|1|1|G|2607

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain N

60S ribosomal protein L15-A

Chain m

Nucleolar GTP-binding protein 2