IL_7BTB_083
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAG*UGAU
- Length
- 38 nucleotides
- Bulged bases
- 7BTB|1|1|G|2549, 7BTB|1|1|U|2550, 7BTB|1|1|U|2551, 7BTB|1|1|A|2554, 7BTB|1|1|U|2558, 7BTB|1|1|U|2559, 7BTB|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BTB|1|1|G|2530
7BTB|1|1|C|2531
7BTB|1|1|U|2532
7BTB|1|1|G|2533
7BTB|1|1|G|2534
7BTB|1|1|A|2535
7BTB|1|1|A|2536
7BTB|1|1|U|2537
7BTB|1|1|U|2538
7BTB|1|1|C|2539
7BTB|1|1|A|2540
7BTB|1|1|U|2541
7BTB|1|1|U|2542
7BTB|1|1|U|2543
7BTB|1|1|U|2544
7BTB|1|1|C|2545
7BTB|1|1|C|2546
7BTB|1|1|A|2547
7BTB|1|1|C|2548
7BTB|1|1|G|2549
7BTB|1|1|U|2550
7BTB|1|1|U|2551
7BTB|1|1|C|2552
7BTB|1|1|U|2553
7BTB|1|1|A|2554
7BTB|1|1|G|2555
7BTB|1|1|C|2556
7BTB|1|1|A|2557
7BTB|1|1|U|2558
7BTB|1|1|U|2559
7BTB|1|1|C|2560
7BTB|1|1|A|2561
7BTB|1|1|A|2562
7BTB|1|1|G|2563
*
7BTB|1|1|U|2578
7BTB|1|1|G|2579
7BTB|1|1|A|2580
7BTB|1|1|U|2581
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
- Chain q
- Ribosome biogenesis protein NOP53
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