IL_7BTB_088
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- AGUCC*GCU
- Length
- 8 nucleotides
- Bulged bases
- 7BTB|1|1|U|2771, 7BTB|1|1|C|2772
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7BTB_088 not in the Motif Atlas
- Geometric match to IL_3GM7_006
- Geometric discrepancy: 0.3412
- The information below is about IL_3GM7_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
7BTB|1|1|A|2769
7BTB|1|1|G|2770
7BTB|1|1|U|2771
7BTB|1|1|C|2772
7BTB|1|1|C|2773
*
7BTB|1|1|G|2787
7BTB|1|1|C|2788
7BTB|1|1|U|2789
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L28
Coloring options: