IL_7BTB_100

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

7BTB|1|1|U|3078, 7BTB|1|1|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_100 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.1022

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7BTB|1|1|C|3063
7BTB|1|1|U|3064
*
7BTB|1|1|A|3077
7BTB|1|1|U|3078
7BTB|1|1|U|3079
7BTB|1|1|G|3080

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A