IL_7BTB_134
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- UUUG*CAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7BTB_134 not in the Motif Atlas
- Geometric match to IL_7ECK_023
- Geometric discrepancy: 0.2391
- The information below is about IL_7ECK_023
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
7BTB|1|1|U|2426
7BTB|1|1|U|2427
7BTB|1|1|U|2428
7BTB|1|1|G|2429
*
7BTB|1|1|C|2600
7BTB|1|1|A|2601
7BTB|1|1|G|2602
7BTB|1|1|G|2603
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain m
- Nucleolar GTP-binding protein 2
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