IL_7BV8_004

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

7BV8|1|A|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BV8_004 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.1067

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7BV8|1|A|G|81
7BV8|1|A|U|82
7BV8|1|A|A|83
7BV8|1|A|A|84
7BV8|1|A|G|85
*
7BV8|1|A|C|97
7BV8|1|A|G|98
7BV8|1|A|U|99
7BV8|1|A|U|100
7BV8|1|A|A|101
7BV8|1|A|U|102
7BV8|1|A|A|103
7BV8|1|A|A|104
7BV8|1|A|C|105

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L24

Chain Z

50S ribosomal protein L29