IL_7BV8_009

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BV8_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2802

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7BV8|1|A|C|274
7BV8|1|A|C|275
7BV8|1|A|U|276
7BV8|1|A|G|277
7BV8|1|A|A|278
7BV8|1|A|A|279
7BV8|1|A|U|280
7BV8|1|A|C|281
*
7BV8|1|A|G|359
7BV8|1|A|U|360
7BV8|1|A|G|361
7BV8|1|A|A|362
7BV8|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains