IL_7BV8_011

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

7BV8|1|A|A|504, 7BV8|1|A|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BV8_011 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7BV8|1|A|G|481
7BV8|1|A|A|482
7BV8|1|A|A|483
7BV8|1|A|C|484
*
7BV8|1|A|G|496
7BV8|1|A|A|497
7BV8|1|A|G|498
7BV8|1|A|U|499
7BV8|1|A|G|500
7BV8|1|A|A|501
7BV8|1|A|A|502
7BV8|1|A|A|503
7BV8|1|A|A|504
7BV8|1|A|A|505
7BV8|1|A|G|506
7BV8|1|A|A|507
7BV8|1|A|A|508
7BV8|1|A|C|509

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24