IL_7BV8_021

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

7BV8|1|A|G|776, 7BV8|1|A|A|788, 7BV8|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BV8_021 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.1101

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

7BV8|1|A|G|775
7BV8|1|A|G|776
7BV8|1|A|G|777
*
7BV8|1|A|C|787
7BV8|1|A|A|788
7BV8|1|A|A|789
7BV8|1|A|U|790
7BV8|1|A|C|791

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain T

50S ribosomal protein L22

Chain d

50S ribosomal protein L34