IL_7BV8_040

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGC*GCUCAC

Length

44 nucleotides

Bulged bases

7BV8|1|A|U|1061, 7BV8|1|A|C|1064, 7BV8|1|A|A|1070, 7BV8|1|A|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BV8|1|A|G|1055
7BV8|1|A|G|1056
7BV8|1|A|A|1057
7BV8|1|A|U|1058
7BV8|1|A|G|1059
7BV8|1|A|U|1060
7BV8|1|A|U|1061
7BV8|1|A|G|1062
7BV8|1|A|G|1063
7BV8|1|A|C|1064
7BV8|1|A|U|1065
7BV8|1|A|U|1066
7BV8|1|A|A|1067
7BV8|1|A|G|1068
7BV8|1|A|A|1069
7BV8|1|A|A|1070
7BV8|1|A|G|1071
7BV8|1|A|C|1072
7BV8|1|A|A|1073
7BV8|1|A|G|1074
7BV8|1|A|C|1075
7BV8|1|A|C|1076
7BV8|1|A|A|1077
7BV8|1|A|U|1078
7BV8|1|A|C|1079
7BV8|1|A|A|1080
7BV8|1|A|U|1081
7BV8|1|A|U|1082
7BV8|1|A|U|1083
7BV8|1|A|A|1084
7BV8|1|A|A|1085
7BV8|1|A|A|1086
7BV8|1|A|G|1087
7BV8|1|A|A|1088
7BV8|1|A|A|1089
7BV8|1|A|A|1090
7BV8|1|A|G|1091
7BV8|1|A|C|1092
*
7BV8|1|A|G|1099
7BV8|1|A|C|1100
7BV8|1|A|U|1101
7BV8|1|A|C|1102
7BV8|1|A|A|1103
7BV8|1|A|C|1104

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36