IL_7BV8_069

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BV8_069 not in the Motif Atlas

Homologous match to IL_4WF9_072

Geometric discrepancy: 0.2524

The information below is about IL_4WF9_072

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7BV8|1|A|G|1846
7BV8|1|A|A|1847
7BV8|1|A|A|1848
7BV8|1|A|G|1849
*
7BV8|1|A|C|1893
7BV8|1|A|C|1894

Current chains

Chain A

23S rRNA

Nearby chains