IL_7CPJ_064

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7CPJ|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPJ_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1186

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7CPJ|1|A|U|1712
7CPJ|1|A|A|1713
7CPJ|1|A|U|1714
7CPJ|1|A|G|1715
7CPJ|1|A|U|1716
7CPJ|1|A|A|1717
7CPJ|1|A|G|1718
*
7CPJ|1|A|U|1742
7CPJ|1|A|G|1743
7CPJ|1|A|A|1744
7CPJ|1|A|A|1745
7CPJ|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains