IL_7CPJ_169

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPJ_169 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1536

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPJ|1|a|C|1303
7CPJ|1|a|G|1304
7CPJ|1|a|G|1305
7CPJ|1|a|A|1306
7CPJ|1|a|U|1307
7CPJ|1|a|U|1308
*
7CPJ|1|a|A|1329
7CPJ|1|a|U|1330
7CPJ|1|a|G|1331
7CPJ|1|a|A|1332
7CPJ|1|a|A|1333
7CPJ|1|a|G|1334

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19