IL_7CPJ_193

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPJ_193 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.3073

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7CPJ|1|a|U|409
7CPJ|1|a|G|410
7CPJ|1|a|A|411
7CPJ|1|a|A|412
7CPJ|1|a|G|413
7CPJ|1|a|A|414
7CPJ|1|a|A|415
7CPJ|1|a|G|416
*
7CPJ|1|a|U|427
7CPJ|1|a|G|428
7CPJ|1|a|U|429
7CPJ|1|a|A|430
7CPJ|1|a|A|431
7CPJ|1|a|A|432
7CPJ|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4