IL_7CPV_010

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGGGG*CGGCGCGCCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|C|175
7CPV|1|L5|G|176
7CPV|1|L5|G|177
7CPV|1|L5|G|189
7CPV|1|L5|G|190
*
7CPV|1|L5|C|251
7CPV|1|L5|G|252
7CPV|1|L5|G|253
7CPV|1|L5|C|254
7CPV|1|L5|G|255
7CPV|1|L5|C|256
7CPV|1|L5|G|257
7CPV|1|L5|C|258
7CPV|1|L5|C|259
7CPV|1|L5|G|260

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37