IL_7CPV_015
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 7CPV|1|L5|G|408, 7CPV|1|L5|G|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_015 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1248
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
7CPV|1|L5|G|386
7CPV|1|L5|A|387
7CPV|1|L5|A|388
7CPV|1|L5|C|389
*
7CPV|1|L5|G|400
7CPV|1|L5|A|401
7CPV|1|L5|G|402
7CPV|1|L5|U|403
7CPV|1|L5|U|404
7CPV|1|L5|C|405
7CPV|1|L5|A|406
7CPV|1|L5|A|407
7CPV|1|L5|G|408
7CPV|1|L5|A|409
7CPV|1|L5|G|410
7CPV|1|L5|G|411
7CPV|1|L5|G|412
7CPV|1|L5|C|413
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- Ribosomal protein L39-like
Coloring options: