IL_7CPV_017
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GGUC*GCUAC
- Length
- 9 nucleotides
- Bulged bases
- 7CPV|1|L5|C|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_017 not in the Motif Atlas
- Geometric match to IL_7MLW_007
- Geometric discrepancy: 0.3617
- The information below is about IL_7MLW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49140.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
7CPV|1|L5|G|442
7CPV|1|L5|G|443
7CPV|1|L5|U|444
7CPV|1|L5|C|445
*
7CPV|1|L5|G|1115
7CPV|1|L5|C|1116
7CPV|1|L5|U|1117
7CPV|1|L5|A|1118
7CPV|1|L5|C|1119
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
Coloring options: