IL_7CPV_034

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUC*GUCCG

Length

8 nucleotides

Bulged bases

7CPV|1|L5|U|1048, 7CPV|1|L5|C|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_034 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.3637

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7CPV|1|L5|C|938
7CPV|1|L5|U|939
7CPV|1|L5|C|940
*
7CPV|1|L5|G|1047
7CPV|1|L5|U|1048
7CPV|1|L5|C|1049
7CPV|1|L5|C|1050
7CPV|1|L5|G|1051

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29