IL_7CPV_041

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_041 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1447

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7CPV|1|L5|C|1245
7CPV|1|L5|G|1246
7CPV|1|L5|A|1247
7CPV|1|L5|G|1248
*
7CPV|1|L5|C|1264
7CPV|1|L5|G|1265
7CPV|1|L5|A|1266
7CPV|1|L5|G|1267

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18