IL_7CPV_042

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7CPV|1|L5|A|1311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_042 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.0669

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7CPV|1|L5|C|1281
7CPV|1|L5|C|1282
*
7CPV|1|L5|G|1310
7CPV|1|L5|A|1311
7CPV|1|L5|G|1312

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29