IL_7CPV_066
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_066 not in the Motif Atlas
- Geometric match to IL_7RQB_037
- Geometric discrepancy: 0.1237
- The information below is about IL_7RQB_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_15861.7
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
7CPV|1|L5|C|1714
7CPV|1|L5|G|1715
7CPV|1|L5|C|1716
7CPV|1|L5|C|1717
7CPV|1|L5|C|1718
7CPV|1|L5|G|1719
7CPV|1|L5|A|1720
7CPV|1|L5|U|1721
*
7CPV|1|L5|G|1867
7CPV|1|L5|G|1868
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
- Chain Lf
- 60S ribosomal protein L35a
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