IL_7CPV_083

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_083 not in the Motif Atlas

Geometric match to IL_5TBW_068

Geometric discrepancy: 0.1633

The information below is about IL_5TBW_068

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7CPV|1|L5|G|2313
7CPV|1|L5|G|2314
7CPV|1|L5|C|2315
*
7CPV|1|L5|G|2323
7CPV|1|L5|G|2324
7CPV|1|L5|C|2325

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27