IL_7CPV_110
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 7CPV|1|L5|G|3735, 7CPV|1|L5|G|3737, 7CPV|1|L5|G|3738, 7CPV|1|L5|C|3815, 7CPV|1|L5|U|3816
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_110 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2079
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
7CPV|1|L5|G|3733
7CPV|1|L5|U|3734
7CPV|1|L5|G|3735
7CPV|1|L5|A|3736
7CPV|1|L5|G|3737
7CPV|1|L5|G|3738
7CPV|1|L5|C|3739
*
7CPV|1|L5|G|3814
7CPV|1|L5|C|3815
7CPV|1|L5|U|3816
7CPV|1|L5|C|3817
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
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