IL_7CPV_136

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

7CPV|1|L5|A|4309, 7CPV|1|L5|U|4310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_136 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2364

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7CPV|1|L5|U|4294
7CPV|1|L5|U|4295
*
7CPV|1|L5|A|4308
7CPV|1|L5|A|4309
7CPV|1|L5|U|4310
7CPV|1|L5|G|4311

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31