IL_7CPV_142

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CCCCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

7CPV|1|L5|C|4411, 7CPV|1|L5|C|4412, 7CPV|1|L5|A|4418, 7CPV|1|L5|G|4516, 7CPV|1|L5|C|4517, 7CPV|1|L5|G|4519, 7CPV|1|L5|A|4522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|C|4410
7CPV|1|L5|C|4411
7CPV|1|L5|C|4412
7CPV|1|L5|C|4413
7CPV|1|L5|G|4414
7CPV|1|L5|G|4415
7CPV|1|L5|A|4416
7CPV|1|L5|U|4417
7CPV|1|L5|A|4418
7CPV|1|L5|G|4419
*
7CPV|1|L5|U|4515
7CPV|1|L5|G|4516
7CPV|1|L5|C|4517
7CPV|1|L5|G|4518
7CPV|1|L5|G|4519
7CPV|1|L5|A|4520
7CPV|1|L5|G|4521
7CPV|1|L5|A|4522
7CPV|1|L5|G|4523

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a