IL_7CPV_143

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UCUU*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_143 not in the Motif Atlas

Geometric match to IL_3R2D_002

Geometric discrepancy: 0.2193

The information below is about IL_3R2D_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7CPV|1|L5|U|4531
7CPV|1|L5|C|4532
7CPV|1|L5|U|4533
7CPV|1|L5|U|4534
*
7CPV|1|L5|G|4577
7CPV|1|L5|U|4578
7CPV|1|L5|C|4579
7CPV|1|L5|A|4580

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14