IL_7CPV_192

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7CPV|1|S2|A|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_192 not in the Motif Atlas

Geometric match to IL_5J7L_026

Geometric discrepancy: 0.1236

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7CPV|1|S2|G|666
7CPV|1|S2|U|667
7CPV|1|S2|U|668
7CPV|1|S2|A|669
7CPV|1|S2|A|670
7CPV|1|S2|A|671
7CPV|1|S2|A|672
*
7CPV|1|S2|U|1162
7CPV|1|S2|C|1163

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26