IL_7CPV_249

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_249 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0667

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7CPV|1|L5|G|2601
7CPV|1|L5|G|2602
7CPV|1|L5|A|2603
7CPV|1|L5|A|2604
7CPV|1|L5|G|2605
7CPV|1|L5|U|2606
7CPV|1|L5|C|2607
7CPV|1|L5|G|2608
7CPV|1|L5|G|2609
*
7CPV|1|L5|C|3494
7CPV|1|L5|U|3495
7CPV|1|L5|G|3496
7CPV|1|L5|U|3497
7CPV|1|L5|C|3498

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23