IL_7CPV_254
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 7CPV|1|S2|C|65, 7CPV|1|S2|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_254 not in the Motif Atlas
- Homologous match to IL_8P9A_379
- Geometric discrepancy: 0.3913
- The information below is about IL_8P9A_379
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.2
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
7CPV|1|S2|U|63
7CPV|1|S2|A|64
7CPV|1|S2|C|65
7CPV|1|S2|G|66
7CPV|1|S2|C|67
7CPV|1|S2|A|68
*
7CPV|1|S2|U|81
7CPV|1|S2|G|82
7CPV|1|S2|A|83
7CPV|1|S2|A|84
7CPV|1|S2|A|85
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
Coloring options: