IL_7D4I_003

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GACUC*GAAACUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|3A|G|47
7D4I|1|3A|A|48
7D4I|1|3A|C|49
7D4I|1|3A|U|50
7D4I|1|3A|C|51
*
7D4I|1|5A|G|465
7D4I|1|5A|A|466
7D4I|1|5A|A|467
7D4I|1|5A|A|468
7D4I|1|5A|C|469
7D4I|1|5A|U|470
7D4I|1|5A|C|471

Current chains

Chain 3A

U3 snoRNA

Chain 5A

5' ETS

Nearby chains

Chain 3E

Nucleolar protein 58

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain 5F

U3 small nucleolar ribonucleoprotein protein IMP3

Chain AE

U3 small nucleolar RNA-associated protein 10