IL_7D4I_007

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCGUUGCA*UUUUAUGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|3A|C|200
7D4I|1|3A|C|201
7D4I|1|3A|G|202
7D4I|1|3A|U|203
7D4I|1|3A|U|204
7D4I|1|3A|G|205
7D4I|1|3A|C|206
7D4I|1|3A|A|207
*
7D4I|1|3A|U|242
7D4I|1|3A|U|243
7D4I|1|3A|U|244
7D4I|1|3A|U|245
7D4I|1|3A|A|246
7D4I|1|3A|U|247
7D4I|1|3A|G|248
7D4I|1|3A|G|249

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3F

Ribosomal RNA-processing protein 9