IL_7D4I_015
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D4I_015 not in the Motif Atlas
- Homologous match to IL_4V88_389
- Geometric discrepancy: 0.3399
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
7D4I|1|SA|U|58
7D4I|1|SA|C|59
7D4I|1|SA|U|60
7D4I|1|SA|A|61
7D4I|1|SA|A|62
7D4I|1|SA|G|63
*
7D4I|1|SA|C|87
7D4I|1|SA|U|88
7D4I|1|SA|G|89
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SF
- 40S ribosomal protein S4-A
- Chain SH
- 40S ribosomal protein S6-A
- Chain SZ
- 40S ribosomal protein S24-A
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