IL_7D4I_022

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUUU*AACUUUUC

Length

14 nucleotides

Bulged bases

7D4I|1|SA|U|260, 7D4I|1|SA|U|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|SA|G|204
7D4I|1|SA|U|205
7D4I|1|SA|A|206
7D4I|1|SA|U|207
7D4I|1|SA|U|208
7D4I|1|SA|U|209
*
7D4I|1|SA|A|256
7D4I|1|SA|A|257
7D4I|1|SA|C|258
7D4I|1|SA|U|259
7D4I|1|SA|U|260
7D4I|1|SA|U|261
7D4I|1|SA|U|262
7D4I|1|SA|C|263

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SF

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S6-A

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A