IL_7D4I_027

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7D4I|1|SA|U|320, 7D4I|1|SA|C|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_027 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.4433

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

7D4I|1|SA|U|318
7D4I|1|SA|U|319
7D4I|1|SA|U|320
7D4I|1|SA|C|321
7D4I|1|SA|G|322
7D4I|1|SA|A|323
*
7D4I|1|SA|U|345
7D4I|1|SA|G|346

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A