IL_7D4I_028

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7D4I|1|SA|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_028 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.1795

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7D4I|1|SA|U|439
7D4I|1|SA|U|440
7D4I|1|SA|A|441
*
7D4I|1|SA|U|463
7D4I|1|SA|A|464

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A