IL_7D4I_042

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACUUUG*CAUGGAAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|SA|A|746
7D4I|1|SA|C|747
7D4I|1|SA|U|748
7D4I|1|SA|U|749
7D4I|1|SA|U|750
7D4I|1|SA|G|751
*
7D4I|1|SA|C|798
7D4I|1|SA|A|799
7D4I|1|SA|U|800
7D4I|1|SA|G|801
7D4I|1|SA|G|802
7D4I|1|SA|A|803
7D4I|1|SA|A|804
7D4I|1|SA|U|805

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SF

40S ribosomal protein S4-A

Chain SM

40S ribosomal protein S11-A

Chain SX

40S ribosomal protein S22-B