IL_7D4I_053
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCUG*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D4I_053 not in the Motif Atlas
- Geometric match to IL_4ZNP_002
- Geometric discrepancy: 0.3186
- The information below is about IL_4ZNP_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
7D4I|1|SA|C|1173
7D4I|1|SA|C|1174
7D4I|1|SA|U|1175
7D4I|1|SA|G|1176
*
7D4I|1|SA|C|1463
7D4I|1|SA|G|1464
7D4I|1|SA|C|1465
7D4I|1|SA|G|1466
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RN
- Nucleolar complex protein 14
- Chain SU
- 40S ribosomal protein S19-A
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