IL_7D4I_055

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_055 not in the Motif Atlas

Geometric match to IL_5TBW_375

Geometric discrepancy: 0.2545

The information below is about IL_5TBW_375

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7D4I|1|SA|A|1224
7D4I|1|SA|U|1225
7D4I|1|SA|A|1226
*
7D4I|1|SA|U|1258
7D4I|1|SA|U|1259

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RN

Nucleolar complex protein 14

Chain RS

Essential nuclear protein 1