IL_7D4I_073

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_073 not in the Motif Atlas

Homologous match to IL_8P9A_384

Geometric discrepancy: 0.3238

The information below is about IL_8P9A_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

7D4I|1|SA|U|150
7D4I|1|SA|G|151
7D4I|1|SA|U|152
*
7D4I|1|SA|A|162
7D4I|1|SA|G|163
7D4I|1|SA|A|164

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SH

40S ribosomal protein S6-A

Chain SZ

40S ribosomal protein S24-A