IL_7D6Z_010

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_010 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.25

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7D6Z|1|A|C|274
7D6Z|1|A|C|275
7D6Z|1|A|U|276
7D6Z|1|A|G|277
7D6Z|1|A|A|278
7D6Z|1|A|A|279
7D6Z|1|A|U|280
7D6Z|1|A|C|281
*
7D6Z|1|A|G|359
7D6Z|1|A|U|360
7D6Z|1|A|G|361
7D6Z|1|A|A|362
7D6Z|1|A|G|363

Current chains

Chain A

23S ribosomal rRNA

Nearby chains