IL_7D6Z_019

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_019 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.0807

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7D6Z|1|A|U|703
7D6Z|1|A|G|704
7D6Z|1|A|A|705
7D6Z|1|A|A|706
7D6Z|1|A|G|707
*
7D6Z|1|A|U|724
7D6Z|1|A|G|725
7D6Z|1|A|G|726
7D6Z|1|A|A|727
7D6Z|1|A|G|728

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

50S ribosomal protein L2