IL_7D6Z_034

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7D6Z|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_034 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1428

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7D6Z|1|A|U|1018
7D6Z|1|A|U|1019
7D6Z|1|A|A|1020
7D6Z|1|A|A|1021
7D6Z|1|A|G|1022
7D6Z|1|A|U|1023
7D6Z|1|A|G|1024
*
7D6Z|1|A|C|1140
7D6Z|1|A|U|1141
7D6Z|1|A|A|1142
7D6Z|1|A|A|1143
7D6Z|1|A|A|1144

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain e

50S ribosomal protein L36