IL_7D6Z_048

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_048 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0723

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7D6Z|1|A|C|1357
7D6Z|1|A|G|1358
7D6Z|1|A|A|1359
7D6Z|1|A|G|1360
7D6Z|1|A|G|1361
*
7D6Z|1|A|C|1370
7D6Z|1|A|G|1371
7D6Z|1|A|U|1372
7D6Z|1|A|A|1373
7D6Z|1|A|G|1374

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28

Chain c

50S ribosomal protein L34