IL_7D6Z_049

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_049 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.2078

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7D6Z|1|A|U|1415
7D6Z|1|A|G|1416
*
7D6Z|1|A|C|1582
7D6Z|1|A|A|1583
7D6Z|1|A|U|1584
7D6Z|1|A|C|1585
7D6Z|1|A|A|1586
7D6Z|1|A|G|1587

Current chains

Chain A

23S ribosomal rRNA

Nearby chains