IL_7D6Z_050

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

7D6Z|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_050 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.089

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7D6Z|1|A|C|1417
7D6Z|1|A|G|1418
7D6Z|1|A|A|1419
7D6Z|1|A|A|1420
7D6Z|1|A|G|1421
*
7D6Z|1|A|C|1577
7D6Z|1|A|U|1578
7D6Z|1|A|A|1579
7D6Z|1|A|A|1580
7D6Z|1|A|G|1581

Current chains

Chain A

23S ribosomal rRNA

Nearby chains